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  • Larry Knox's avatar
    7741170b
    Sync develop branch changes since 2/16 to hdf5_1_14 branch (#4058) · 7741170b
    Larry Knox authored
    
    
    * Remove oneapi return value warning. (#4028)
    
    * Replaced last sprintf with snprintf (#4007)
    
    * Replaced last sprintf with snprintf
    
    To have the size of the buffer, it was required to change a function signature, and change all users of it.
    
    In most cases, determining the buffer size wasn't  trivial and so SIZE_MAX is passed. But at least this improves the infrastructure. Someone can later figure out the correct sizes.
    
    * Test vlen sequence IO in API tests (#4027)
    
    * Check argument for CMake REGEX FCMangle.h. (#4029)
    
    * Replace deprecated Fortran 'include mpif.h' with 'USE mpi' (#4031)
    
    With MPI 4.1 the use of the mpif.h include file has been deprecated. Codes
    should transition to USE mpi or USE mpi_f08.
    
    Signed-off-by: default avatarChristoph Niethammer <niethammer@hlrs.de>
    
    * Fix H5F_get_access_plist to copy file locking settings (#4030)
    
    H5F_get_access_plist previously did not copy over the file locking settings
    from a file into the new File Access Property List that it creates. This would
    make it difficult to match the file locking settings between an external file
    and its parent file.
    
    * Fix missing NOT from if check in HL folder (#4036)
    
    * Fix the datatype passed to H5*exists_async APIs in tests. (#4033)
    
    Add a new testing function to verify C_BOOL values.
    
    * Add deb and rpm binaries to snapshots (#4035)
    
    * Update and Add general INSTALL (#4016)
    
    * Improve performance of flushing single objects (#4017)
    
    Improve performance of flushing a single object, and remove metadata
    cache flush markers
    
    * Fix memory leak in H5LTopen_file_image when H5LT_FILE_IMAGE_DONT_COPY flag is used (#4021)
    
    When the H5LT_FILE_IMAGE_DONT_COPY flag is passed to H5LTopen_file_image, the internally-allocated
    udata structure gets leaked as the core file driver doesn't have a way to determine when or if it
    needs to call the 'udata_free' callback. This has been fixed by freeing the udata structure when
    the 'image_free' callback gets made during file close, where the file is holding the last reference
    to the udata structure.
    
    * Fix allocating too much memory in dset API test (#4041)
    
    * Don't try to load general-19 warnings file for icc (#4042)
    
    The Autools Classic Intel compiler configuration attempts to load a file
    named `general-19` from the intel-warnings/classic directory, which does
    not exist.
    
    This removes the attempted load of the file.
    
    * Remove unused AIX cross-compile cache overrides (#4043)
    
    The ibm-aix Autotools config file had some unmaintained and unnecessary
    Autoconf cache overrides. These have been removed.
    
    * Consolidate Autotools linux files (#4044)
    
    There are many architecture-specific linux files in the config
    directory, all of which simply redirect to linux-gnulibc1.
    
    This change renames linux-gnulibc1 to linux-gnu and deletes the more
    specific files.
    
    * Remove check for gettimeofday + tz in CMake (#4045)
    
    This is not used in the library
    
    * Remove limitations on preset generators (#4051)
    
    * Fix issue with FAPL file locking setting inheriting test (#4053)
    
    Fixes an issue where the HDF5_USE_FILE_LOCKING environment variable being
    set can interfere with the file locking setting that the test expects to
    be returned.
    
    * Bump the github-actions group with 2 updates (#4054)
    
    Bumps the github-actions group with 2 updates: [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).
    
    * Fix VOL-compatibility issues in External Link API test  (#4039)
    
    Fix link API tests with incorrect filename
    
    * Add upddated cmake tools from source location (#4040)
    
    * Add options to allow tools type selection and naming (#4046)
    
    * Improve error messages when tools attempt to use non-enabled S3 and HDFS VFDs. (#4047)
    
    * Correct several 1.15/1.15.0 references to 1.14/1.14.4.
    
    * Ignore HDF5Examples/CMakeUserPresets.json
    7741170b
    Sync develop branch changes since 2/16 to hdf5_1_14 branch (#4058)
    Larry Knox authored
    
    
    * Remove oneapi return value warning. (#4028)
    
    * Replaced last sprintf with snprintf (#4007)
    
    * Replaced last sprintf with snprintf
    
    To have the size of the buffer, it was required to change a function signature, and change all users of it.
    
    In most cases, determining the buffer size wasn't  trivial and so SIZE_MAX is passed. But at least this improves the infrastructure. Someone can later figure out the correct sizes.
    
    * Test vlen sequence IO in API tests (#4027)
    
    * Check argument for CMake REGEX FCMangle.h. (#4029)
    
    * Replace deprecated Fortran 'include mpif.h' with 'USE mpi' (#4031)
    
    With MPI 4.1 the use of the mpif.h include file has been deprecated. Codes
    should transition to USE mpi or USE mpi_f08.
    
    Signed-off-by: default avatarChristoph Niethammer <niethammer@hlrs.de>
    
    * Fix H5F_get_access_plist to copy file locking settings (#4030)
    
    H5F_get_access_plist previously did not copy over the file locking settings
    from a file into the new File Access Property List that it creates. This would
    make it difficult to match the file locking settings between an external file
    and its parent file.
    
    * Fix missing NOT from if check in HL folder (#4036)
    
    * Fix the datatype passed to H5*exists_async APIs in tests. (#4033)
    
    Add a new testing function to verify C_BOOL values.
    
    * Add deb and rpm binaries to snapshots (#4035)
    
    * Update and Add general INSTALL (#4016)
    
    * Improve performance of flushing single objects (#4017)
    
    Improve performance of flushing a single object, and remove metadata
    cache flush markers
    
    * Fix memory leak in H5LTopen_file_image when H5LT_FILE_IMAGE_DONT_COPY flag is used (#4021)
    
    When the H5LT_FILE_IMAGE_DONT_COPY flag is passed to H5LTopen_file_image, the internally-allocated
    udata structure gets leaked as the core file driver doesn't have a way to determine when or if it
    needs to call the 'udata_free' callback. This has been fixed by freeing the udata structure when
    the 'image_free' callback gets made during file close, where the file is holding the last reference
    to the udata structure.
    
    * Fix allocating too much memory in dset API test (#4041)
    
    * Don't try to load general-19 warnings file for icc (#4042)
    
    The Autools Classic Intel compiler configuration attempts to load a file
    named `general-19` from the intel-warnings/classic directory, which does
    not exist.
    
    This removes the attempted load of the file.
    
    * Remove unused AIX cross-compile cache overrides (#4043)
    
    The ibm-aix Autotools config file had some unmaintained and unnecessary
    Autoconf cache overrides. These have been removed.
    
    * Consolidate Autotools linux files (#4044)
    
    There are many architecture-specific linux files in the config
    directory, all of which simply redirect to linux-gnulibc1.
    
    This change renames linux-gnulibc1 to linux-gnu and deletes the more
    specific files.
    
    * Remove check for gettimeofday + tz in CMake (#4045)
    
    This is not used in the library
    
    * Remove limitations on preset generators (#4051)
    
    * Fix issue with FAPL file locking setting inheriting test (#4053)
    
    Fixes an issue where the HDF5_USE_FILE_LOCKING environment variable being
    set can interfere with the file locking setting that the test expects to
    be returned.
    
    * Bump the github-actions group with 2 updates (#4054)
    
    Bumps the github-actions group with 2 updates: [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).
    
    * Fix VOL-compatibility issues in External Link API test  (#4039)
    
    Fix link API tests with incorrect filename
    
    * Add upddated cmake tools from source location (#4040)
    
    * Add options to allow tools type selection and naming (#4046)
    
    * Improve error messages when tools attempt to use non-enabled S3 and HDFS VFDs. (#4047)
    
    * Correct several 1.15/1.15.0 references to 1.14/1.14.4.
    
    * Ignore HDF5Examples/CMakeUserPresets.json
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